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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gld ADP Glycerol kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1gld ADPGlycerol kinase / 0.824
1gle ADPGlycerol kinase / 0.712
4guk P2GNeuronal calcium sensor 1 / 0.671
3bi4 298Polyamine oxidase FMS1 / 0.662
2gyw OBIAcetylcholinesterase 3.1.1.7 0.654
2yeg XQGHeat shock protein HSP 90-alpha / 0.654