Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gky 5GP Guanylate kinase 2.7.4.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1gky 5GPGuanylate kinase 2.7.4.8 1.020
1ex7 5GPGuanylate kinase 2.7.4.8 0.946
1lvg 5GPGuanylate kinase 2.7.4.8 0.892
2j41 5GPGuanylate kinase / 0.841
3lnc 5GPGuanylate kinase / 0.818
2anb 5GPGuanylate kinase 2.7.4.8 0.796
2an9 GDPGuanylate kinase 2.7.4.8 0.744
3tr0 5GPGuanylate kinase / 0.735