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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1giq NAI Iota toxin component Ia

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1giq NAIIota toxin component Ia / 1.185
2wn6 NDPADP-ribosyltransferase enzymatic component / 0.833
1gir NDPIota toxin component Ia / 0.803
4h03 NADIota toxin component Ia / 0.790
4h0y NADIota toxin component Ia / 0.779
4h0v NADIota toxin component Ia / 0.748
3buz TADIota toxin component Ia / 0.723
2bp1 NDPAflatoxin B1 aldehyde reductase member 2 / 0.666
4xzj NADPutative NAD(+)--arginine ADP-ribosyltransferase Vis 2.4.2.31 0.666
3dl0 AP5Adenylate kinase / 0.657
2fzi DH3Dihydrofolate reductase 1.5.1.3 0.651