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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ghe ACO Acetyltransferase 2.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ghe ACOAcetyltransferase 2.3.1 1.306
1j4j ACOAcetyltransferase 2.3.1 0.964
5kf9 ACOPredicted acetyltransferase / 0.907
5kgp ACOPredicted acetyltransferase / 0.877
5kf8 ACOPredicted acetyltransferase / 0.871
2r8v ACOAmino-acid acetyltransferase / 0.868
5kf2 ACOPredicted acetyltransferase / 0.842
3pgp ACOUncharacterized protein / 0.840
5kgj ACOPredicted acetyltransferase / 0.833
4crz ACOPanD regulatory factor / 0.817
4cs0 ACOPanD regulatory factor / 0.810
2cy2 ACOProbable acetyltransferase / 0.807
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.806
5kf1 ACOPredicted acetyltransferase / 0.800
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.799
1qsm ACOHistone acetyltransferase HPA2 / 0.797
2cns ACORibosomal-protein-alanine acetyltransferase / 0.789
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.785
4qvt ACOAcetyltransferase YpeA 2.3.1 0.781
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.775
2bsw CAOProbable acetyltransferase / 0.770
5kgh ACOPredicted acetyltransferase / 0.770
2cnt COARibosomal-protein-alanine acetyltransferase / 0.768
2x7b COAN-alpha-acetyltransferase 2.3.1 0.767
3d2m COAAmino-acid acetyltransferase / 0.766
3te4 ACODopamine N-acetyltransferase / 0.766
1kuv CA5Serotonin N-acetyltransferase / 0.763
2jdd ACOProbable acetyltransferase / 0.754
1p0h ACOMycothiol acetyltransferase 2.3.1.189 0.750
1fy7 COAHistone acetyltransferase ESA1 / 0.744
4cry ACOPanD regulatory factor / 0.744
4r3k COAN-alpha-acetyltransferase 2.3.1 0.744
1l0c COTSerotonin N-acetyltransferase / 0.743
2y0m ACOHistone acetyltransferase KAT8 / 0.742
2zpa ACOtRNA(Met) cytidine acetyltransferase TmcA / 0.742
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.736
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.735
3tfy COAN-alpha-acetyltransferase 50 2.3.1 0.734
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.726
2ob0 ACON-alpha-acetyltransferase 50 / 0.723
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.719
1mj9 COAHistone acetyltransferase ESA1 / 0.718
3exn ACOProbable acetyltransferase / 0.710
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.704
5kf2 COAPredicted acetyltransferase / 0.704
2vbq BSJAminoglycoside N(6')-acetyltransferase type 1 / 0.703
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.703
1mja COAHistone acetyltransferase ESA1 / 0.699
3f0a ACOSpermidine N(1)-acetyltransferase / 0.697
1n71 COAAac(6')-Ii protein / 0.696
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 0.696
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.694
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.693
1wwz ACOUncharacterized protein / 0.690
2psw COAN-alpha-acetyltransferase 50 / 0.689
3bj7 COADiamine acetyltransferase 1 / 0.689
1cjw COTSerotonin N-acetyltransferase / 0.688
2giv ACOHistone acetyltransferase KAT8 / 0.687
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.685
2ou2 ACOHistone acetyltransferase KAT5 / 0.684
4jwp ACOGCN5-related N-acetyltransferase / 0.684
4xpd ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.684
2fxf ACODiamine acetyltransferase 1 / 0.680
1mjb ACOHistone acetyltransferase ESA1 / 0.679
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.679
1ib1 COTSerotonin N-acetyltransferase / 0.677
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.677
1pua COAHAT A1 / 0.675
2b3v ACODiamine acetyltransferase 1 / 0.674
1s5k COAAminoglycoside N(6')-acetyltransferase type 1 / 0.673
1kux CA3Serotonin N-acetyltransferase / 0.672
1qsr ACOHAT A1 / 0.671
1kuy COTSerotonin N-acetyltransferase / 0.669
3r95 ACOMccE protein / 0.669
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.667
3k9u ACOSpermidine N(1)-acetyltransferase / 0.666
1b87 ACOAac(6')-Ii protein / 0.665
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.665
3r96 ACOMccE protein / 0.665
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 0.664
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 0.664
2o28 COAGlucosamine 6-phosphate N-acetyltransferase / 0.663
2ozu ACOHistone acetyltransferase KAT6A / 0.663
4gs4 ACOAlpha-tubulin N-acetyltransferase 1 / 0.660
3q33 ACOHistone acetyltransferase RTT109 2.3.1.48 0.655
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.655
2rc4 ACOHistone acetyltransferase KAT6A / 0.654
3f8k COAUncharacterized protein / 0.652
5c88 COAN-alpha-acetyltransferase / 0.650