Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gee NAD Glucose 1-dehydrogenase 1.1.1.47

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
1gee NADGlucose 1-dehydrogenase 1.1.1.47 1.119
1gco NADGlucose 1-dehydrogenase 1.1.1.47 1.117
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 1.002
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.992
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.940
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.893
3wds NADNADH-dependent quinuclidinone reductase / 0.884
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.878
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.874
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.868
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.861
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.847
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.845
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.843
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.841
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.836
4j7u NAPSepiapterin reductase 1.1.1.153 0.834
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.833
1x7h NDPPutative ketoacyl reductase 1.3.1 0.828
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.827
4b79 NADProbable short-chain dehydrogenase / 0.823
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.823
3ak4 NADNADH-dependent quinuclidinone reductase / 0.820
4dbz NDPPutative ketoacyl reductase 1.3.1 0.818
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.815
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.815
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.813
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.813
2c29 NAPDihydroflavonol 4-reductase / 0.812
1x7g NAPPutative ketoacyl reductase 1.3.1 0.811
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.811
1zem NADXylitol dehydrogenase / 0.807
4qec NAPElxO / 0.806
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.805
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.805
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.804
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.803
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.802
2dte NAIGlucose 1-dehydrogenase related protein / 0.801
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.801
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.797
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.797
2jah NDPClavaldehyde dehydrogenase / 0.796
5d2e NAPMlnE / 0.796
2wsb NADGalactitol dehydrogenase / 0.794
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.794
4kwh NAPReductase homolog / 0.793
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.791
4j7x NAPSepiapterin reductase 1.1.1.153 0.791
1ipe NDPTropinone reductase 2 1.1.1.236 0.790
4hwk NAPSepiapterin reductase 1.1.1.153 0.789
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.789
1sny NAPLD36273p / 0.788
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.788
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.788
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.787
4wec NADShort chain dehydrogenase / 0.787
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.787
1ae1 NAPTropinone reductase 1 / 0.786
4qed NAPElxO / 0.786
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.785
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.785
3o26 NDPSalutaridine reductase / 0.784
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.782
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.782
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.777
3sju NDPKeto reductase / 0.777
3qrw NDPPutative ketoacyl reductase 1.3.1 0.776
3ai2 NDPNADPH-sorbose reductase / 0.775
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.775
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.774
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.773
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.772
4fn4 NADShort chain dehydrogenase / 0.771
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.770
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.769
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.767
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.767
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.767
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.765
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.765
2wdz NADGalactitol dehydrogenase / 0.764
2p5y NADUDP-glucose 4-epimerase / 0.763
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.763
3p19 NDPPutative blue fluorescent protein / 0.762
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.761
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.760
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.760
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.759
3tn7 NJPShort-chain alcohol dehydrogenase / 0.759
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.758
3ai3 NDPNADPH-sorbose reductase / 0.758
4hxy NDPPlm1 / 0.758
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.757
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.756
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.755
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.755
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.754
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.754
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.753
4bmv NAPShort-chain dehydrogenase / 0.753
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.752
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.751
3icp NADNAD-dependent epimerase/dehydratase / 0.751
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.751
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.750
3aw9 NADNAD-dependent epimerase/dehydratase / 0.749
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.749
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.748
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.748
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.748
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.748
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.748
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.747
4yai NAIC alpha-dehydrogenase / 0.746
1i3l NADUDP-glucose 4-epimerase / 0.745
2bfo NDPPteridine reductase 1 1.5.1.33 0.743
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.742
3l77 NJPShort-chain alcohol dehydrogenase / 0.742
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.741
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.741
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.741
1sby NADAlcohol dehydrogenase 1.1.1.1 0.740
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.740
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.740
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.739
3ko8 NADNAD-dependent epimerase/dehydratase / 0.739
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.739
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.739
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.736
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.735
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.733
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.733
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.733
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.732
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.732
3uce NDPDehydrogenase / 0.732
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.731
3geg NADShort-chain dehydrogenase/reductase SDR / 0.731
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.731
4idg NADPutative UDP-glucose 4-epimerase / 0.730
5jla NADPutative short-chain dehydrogenase/reductase / 0.729
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.728
3r3s NADPutative oxidoreductase / 0.727
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.726
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.724
3d3w NAPL-xylulose reductase 1.1.1.10 0.723
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.723
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.722
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.722
1xkq NDPUncharacterized protein / 0.721
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.721
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.720
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.720
1rpn NDPGDP-mannose 4,6-dehydratase / 0.717
3mje NDPAmphB / 0.717
5jyd NADShort chain dehydrogenase / 0.717
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.716
3tsc NADUncharacterized protein / 0.714
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.714
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.712
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.712
2yy7 NADL-threonine dehydrogenase / 0.710
3s55 NADPutative short-chain dehydrogenase/reductase / 0.710
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.709
1iy8 NADLevodione reductase / 0.709
1w4z NAPPutative ketoacyl reductase 1.3.1 0.709
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.708
1orr NADCDP-paratose 2-epimerase / 0.706
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.706
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.705
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.705
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.703
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.702
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.702
2p5u NADUDP-glucose 4-epimerase / 0.702
3ajr NADNDP-sugar epimerase / 0.702
4egb NADdTDP-glucose 4,6-dehydratase / 0.702
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.702
4yag NAIC alpha-dehydrogenase / 0.702
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.700
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.698
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.698
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.697
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.697
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.697
3bmo NAPPteridine reductase / 0.696
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.695
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.695
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.695
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.695
3a9w NADNDP-sugar epimerase / 0.692
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.692
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.692
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.691
2yut NAPPutative short-chain oxidoreductase / 0.689
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.689
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.687
3orf NADDihydropteridine reductase 1.5.1.34 0.686
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
1g1a NADdTDP-glucose 4,6-dehydratase / 0.684
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.684
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.683
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.682
2hsd NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.682
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.682
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.682
2x86 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.680
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.679
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.678
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.678
2bd0 NAPSepiapterin reductase / 0.677
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.676
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.676
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.675
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.675
3wmx NADNAD dependent epimerase/dehydratase / 0.675
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.674
3tox NAPPutative oxidoreductase / 0.673
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.672
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.672
4clo NAPPteridine reductase / 0.672
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
3f1k NAPUncharacterized oxidoreductase YciK 1 0.671
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.670
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.667
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.666
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.665
2bgl NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.664
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.664
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.664
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.663
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.661
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.661
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.659
4eso NAPPutative oxidoreductase / 0.659
4xgi NADGlutamate dehydrogenase / 0.659
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.657
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.656
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.655
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.654
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.652
2pr2 DG1Enoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.651
1j5p NADL-aspartate dehydrogenase 1.4.1.21 0.650
1kc1 NDPdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.650
4imp NDPPolyketide synthase extender modules 3-4 / 0.650