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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ga8 UPF LgtC

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ga8 UPFLgtC / 1.316
1g9r UPFLgtC / 1.286
1ss9 UPFLgtC / 1.023
3rmw UPGGlycogenin-1 2.4.1.186 0.735
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.725
1zdf UPGGlycogenin-1 2.4.1.186 0.709
1zdg UPGGlycogenin-1 2.4.1.186 0.688
5iqb GNPBifunctional AAC/APH 2.3.1 0.680
5c1l GDUHisto-blood group ABO system transferase / 0.677
5c3b URMHisto-blood group ABO system transferase / 0.669
5c1g GDUHisto-blood group ABO system transferase / 0.662
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.661
3srz UPGToxin A / 0.661
5c8r UPGHisto-blood group ABO system transferase / 0.659
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.656
1zar ADPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.654
5c48 URMHisto-blood group ABO system transferase / 0.652
5c3a URMHisto-blood group ABO system transferase / 0.651