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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1g9r UPF LgtC

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1g9r UPFLgtC / 1.384
1ga8 UPFLgtC / 1.286
1ss9 UPFLgtC / 1.066
3rmw UPGGlycogenin-1 2.4.1.186 0.706
3v0m 5GWHisto-blood group ABO system transferase / 0.702
1zdf UPGGlycogenin-1 2.4.1.186 0.695
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.692
5c3b URMHisto-blood group ABO system transferase / 0.691
4kc4 WS3Histo-blood group ABO system transferase / 0.690
1zdg UPGGlycogenin-1 2.4.1.186 0.682
3jsz UPGUncharacterized protein / 0.682
5iqb GNPBifunctional AAC/APH 2.3.1 0.680
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.674
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.670
5c3a URMHisto-blood group ABO system transferase / 0.666
4uak ADPSerine/threonine-protein kinase MRCK beta 2.7.11.1 0.664
3gg2 UGASugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family / 0.662
4dlv GNPGTPase HRas / 0.662
1g93 UPGN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.661
4eoo ATPCyclin-dependent kinase 2 2.7.11.22 0.661
3zgf IUGHisto-blood group ABO system transferase / 0.658
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.657
3srz UPGToxin A / 0.655
4fmq ANPMitogen-activated protein kinase 1 2.7.11.24 0.655
5c8r UPGHisto-blood group ABO system transferase / 0.655
1zar ADPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.654
2vkd UPGCytotoxin L / 0.654
2w4j ADPDeath-associated protein kinase 1 2.7.11.1 0.654
4qxa GTPRas-related protein Rab-9A / 0.652