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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1g93 UPG N-acetyllactosaminide alpha-1,3-galactosyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1g93 UPGN-acetyllactosaminide alpha-1,3-galactosyltransferase / 1.117
5c8r UPGHisto-blood group ABO system transferase / 0.794
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.779
5c1g GDUHisto-blood group ABO system transferase / 0.758
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.687
5c47 URMHisto-blood group ABO system transferase / 0.678
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.672
5c48 URMHisto-blood group ABO system transferase / 0.669
1g9r UPFLgtC / 0.661
1zdf UPGGlycogenin-1 2.4.1.186 0.657
3v0n 4GWHisto-blood group ABO system transferase / 0.652