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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1g8o U5P N-acetyllactosaminide alpha-1,3-galactosyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 1.032
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.872
5c4c UPGHisto-blood group ABO system transferase / 0.830
5c4f UPGHisto-blood group ABO system transferase / 0.830
4kc4 WS3Histo-blood group ABO system transferase / 0.828
3v0m 5GWHisto-blood group ABO system transferase / 0.826
5c4b UPGHisto-blood group ABO system transferase / 0.823
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.814
4kc1 WS1Histo-blood group ABO system transferase / 0.812
4kc2 WS2Histo-blood group ABO system transferase / 0.809
5c1g GDUHisto-blood group ABO system transferase / 0.804
5c3a URMHisto-blood group ABO system transferase / 0.803
5c48 URMHisto-blood group ABO system transferase / 0.797
5c47 URMHisto-blood group ABO system transferase / 0.793
5c1h GDUHisto-blood group ABO system transferase / 0.790
5c1l GDUHisto-blood group ABO system transferase / 0.783
5c3b URMHisto-blood group ABO system transferase / 0.775
3zgf IUGHisto-blood group ABO system transferase / 0.774
3v0n 4GWHisto-blood group ABO system transferase / 0.771
3v0p 4GWHisto-blood group ABO system transferase / 0.739
3v0o 4GWHisto-blood group ABO system transferase / 0.735
1ga8 UPFLgtC / 0.725
1ss9 UPFLgtC / 0.724
1zdg UPGGlycogenin-1 2.4.1.186 0.700
1zdf UPGGlycogenin-1 2.4.1.186 0.696
3rmw UPGGlycogenin-1 2.4.1.186 0.689
1ro8 C5PAlpha-2,3-/2,8-sialyltransferase / 0.686
3gf4 UPGUDP-galactopyranose mutase 5.4.99.9 0.686
3hdq GDUUDP-galactopyranose mutase / 0.683
1g93 UPGN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.672
2npn SAMPutative cobalamin synthesis related protein / 0.671
1g9r UPFLgtC / 0.670
3tij URINucleoside permease / 0.668
4rpg GDUUDP-galactopyranose mutase 5.4.99.9 0.666
4c5c ATPD-alanine--D-alanine ligase B 6.3.2.4 0.660
4pb1 RBVNucleoside permease / 0.660
3mj4 URMUDP-galactopyranose mutase / 0.659
3inr GDUUDP-galactopyranose mutase 5.4.99.9 0.658
4pb2 5UDNucleoside permease / 0.653
3srz UPGToxin A / 0.652
4nv1 0FXFormyl transferase / 0.652
4pd6 URINucleoside permease / 0.652
5c93 ACPTwo-component system histidine protein kinase / 0.652
1zrd CMPcAMP-activated global transcriptional regulator CRP / 0.651