Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1g1l DAU Glucose-1-phosphate thymidylyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1g1l DAUGlucose-1-phosphate thymidylyltransferase / 1.250
1h5t DAUGlucose-1-phosphate thymidylyltransferase 1 / 1.079
1iin UPGGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.901
4ho5 DAUGlucose-1-phosphate thymidylyltransferase / 0.861
4ho8 UPGGlucose-1-phosphate thymidylyltransferase / 0.807
4ho6 UPGGlucose-1-phosphate thymidylyltransferase / 0.793
1fwy UD1Bifunctional protein GlmU / 0.790
2oi6 UD1Bifunctional protein GlmU / 0.754
3juk UPGUTP--glucose-1-phosphate uridylyltransferase / 0.739
4ho9 GDUGlucose-1-phosphate thymidylyltransferase / 0.719
3d8v UD1Bifunctional protein GlmU / 0.716
1hv9 UD1Bifunctional protein GlmU / 0.714
4g3q UD1Bifunctional protein GlmU / 0.710
4g3p UD1Bifunctional protein GlmU / 0.688
4ho2 THMGlucose-1-phosphate thymidylyltransferase / 0.687
4m2b UPGUDP-glucose pyrophosphorylase / 0.682
3pkp DTPGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.679
3dj4 UD1Bifunctional protein GlmU / 0.676
4g3s UD1Bifunctional protein GlmU / 0.668