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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fw0 KAI Glutamate receptor 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fw0 KAIGlutamate receptor 2 / 1.021
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.949
4f3g KAIGlutamate receptor 3 / 0.949
1lbb KAIGlutamate receptor 2 / 0.936
3c34 KAIGlutamate receptor ionotropic, kainate 1 / 0.928
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 0.914
2pbw DOQGlutamate receptor ionotropic, kainate 1 / 0.913
3kfm KAIGlutamate receptor 4 / 0.913
4f31 KAIGlutamate receptor 3 / 0.908
4bdr KAIGlutamate receptor ionotropic, kainate 2 / 0.899
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.859
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.811
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 0.788
2wky IBCGlutamate receptor ionotropic, kainate 1 / 0.754
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.726
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.712
3h03 UBPGlutamate receptor 2 / 0.711
3vp6 HLDGlutamate decarboxylase 1 4.1.1.15 0.695
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.686
3tza TZGGlutamate receptor 2 / 0.681
1sdw IYTPeptidyl-glycine alpha-amidating monooxygenase 1.14.17.3 0.671
2ojt UBAGlutamate receptor ionotropic, kainate 1 / 0.666
2qs3 UBEGlutamate receptor ionotropic, kainate 1 / 0.660
3rt8 CWDGlutamate receptor 3 / 0.658