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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fvv 107 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fvv 107Cyclin-dependent kinase 2 2.7.11.22 0.985
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.844
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.806
1ke5 LS1Cyclin-dependent kinase 2 2.7.11.22 0.797
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.781
1ke6 LS2Cyclin-dependent kinase 2 2.7.11.22 0.769
4fkw 62KCyclin-dependent kinase 2 2.7.11.22 0.755
1ke9 LS5Cyclin-dependent kinase 2 2.7.11.22 0.754
1ke8 LS4Cyclin-dependent kinase 2 2.7.11.22 0.742
1fvt 106Cyclin-dependent kinase 2 2.7.11.22 0.735
4fkq 42KCyclin-dependent kinase 2 2.7.11.22 0.734
4fkr 45KCyclin-dependent kinase 2 2.7.11.22 0.733
4fkv 61KCyclin-dependent kinase 2 2.7.11.22 0.728
4ez3 0S0Cyclin-dependent kinase 2 2.7.11.22 0.700
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.699
1p2a 5BNCyclin-dependent kinase 2 2.7.11.22 0.691
1v0o INRCell division control protein 2 homolog 2.7.11.22 0.684
1h1r 6CPCyclin-dependent kinase 2 2.7.11.22 0.679
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.678
2uzd C85Cyclin-dependent kinase 2 2.7.11.22 0.677
2bhe BRYCyclin-dependent kinase 2 2.7.11.22 0.668
1q41 IXMGlycogen synthase kinase-3 beta 2.7.11.26 0.667
3ti1 B49Cyclin-dependent kinase 2 2.7.11.22 0.658
4qmt H1NSerine/threonine-protein kinase 24 2.7.11.1 0.658
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.651
3ggf GVDSerine/threonine-protein kinase 26 / 0.650