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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fro GSB Lactoylglutathione lyase 4.4.1.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fro GSBLactoylglutathione lyase 4.4.1.5 1.109
1qip GNBLactoylglutathione lyase 4.4.1.5 0.863
1bh5 GTXLactoylglutathione lyase 4.4.1.5 0.825
1qin GIPLactoylglutathione lyase 4.4.1.5 0.751
3zzf NLGProtein ARG5,6, mitochondrial 2.7.2.8 0.686
3ewy U5PUridine 5'-monophosphate synthase 4.1.1.23 0.665
1toi HCIAspartate aminotransferase 2.6.1.1 0.653
3koy Z97D-ornithine 4,5-aminomutase subunit beta / 0.652