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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1foa UD1 Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 2.4.1.101

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1foa UD1Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 2.4.1.101 1.452
2apc UDMAlpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 2.4.1.101 1.195
4y6u UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.739
4y9x UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.732
4y6n UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.713
1kws UGAGalactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 / 0.704
3juk UPGUTP--glucose-1-phosphate uridylyltransferase / 0.680
4lv8 ADPRhoptry protein 5 C / 0.671
4lv5 ADPRhoptry protein 5B / 0.663
1ytm ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.661
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.660
1o6y ACPSerine/threonine-protein kinase PknB 2.7.11.1 0.659
1sb9 UPGWbpP / 0.657
2bo8 GDXMannosylglycerate synthase / 0.656
5ccy TMPPolymerase acidic protein / 0.656
2zl9 VDAVitamin D3 receptor / 0.655
1zm7 TTPDeoxynucleoside kinase / 0.654
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.654
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.654
1yqx NAPSinapyl alcohol dehydrogenase / 0.653
3krf DSTGeranyl diphosphate synthase large subunit / 0.652
2c9o ADPRuvB-like 1 3.6.4.12 0.651
1r0z ATPCystic fibrosis transmembrane conductance regulator / 0.650
4cf7 ADPAdenylate kinase / 0.650