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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fnd A2P Ferredoxin--NADP reductase, chloroplastic 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fnd A2PFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.997
1ja0 NAPNADPH--cytochrome P450 reductase / 0.794
3qfc NAPNADPH--cytochrome P450 reductase / 0.794
3qft NAPNADPH--cytochrome P450 reductase / 0.794
3qfs NAPNADPH--cytochrome P450 reductase / 0.791
3zc3 NAPFerredoxin--NADP reductase 1.18.1.2 0.790
4yao 2AMNADPH--cytochrome P450 reductase / 0.790
4yaf 2AMNADPH--cytochrome P450 reductase / 0.785
4y7c NAPNADPH--cytochrome P450 reductase / 0.782
3ojx NAPNADPH--cytochrome P450 reductase / 0.780
1ja1 NAPNADPH--cytochrome P450 reductase / 0.764
1f20 NAPNitric oxide synthase, brain 1.14.13.39 0.762
4y9u NAPNADPH--cytochrome P450 reductase / 0.747
4yau 2AMNADPH--cytochrome P450 reductase / 0.741
4yal 2AMNADPH--cytochrome P450 reductase / 0.733
2bn4 NAPNADPH--cytochrome P450 reductase / 0.731
4y9r NAPNADPH--cytochrome P450 reductase / 0.727
3qe2 NAPNADPH--cytochrome P450 reductase / 0.723
1w87 NAPFerredoxin--NADP reductase 1.18.1.2 0.721
2rc6 NAPFerredoxin--NADP reductase / 0.709
2bpo NAPNADPH--cytochrome P450 reductase / 0.707
4yaw 2AMNADPH--cytochrome P450 reductase / 0.707
3qfr NAPNADPH--cytochrome P450 reductase / 0.702
2bf4 NAPNADPH--cytochrome P450 reductase / 0.689
1amo NAPNADPH--cytochrome P450 reductase / 0.681
1tll NAPNitric oxide synthase, brain 1.14.13.39 0.676
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.675
2fzi DH3Dihydrofolate reductase 1.5.1.3 0.674
1wur 8DGGTP cyclohydrolase 1 / 0.671
3g1r NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.670
4b8w GDPGDP-L-fucose synthase 1.1.1.271 0.667
4kou C04Uncharacterized protein / 0.667
3krf IPEGeranyl diphosphate synthase large subunit / 0.666
3tn7 NJPShort-chain alcohol dehydrogenase / 0.664
3q6j KPC2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.661
4kov KOVUncharacterized protein / 0.660
4kot CE3Uncharacterized protein / 0.659
4psg NOHThymidylate synthase / 0.659
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.657
1wuq 8GTGTP cyclohydrolase 1 / 0.657
2g86 UMPThymidylate synthase / 0.657
3kc1 2T6Fructose-1,6-bisphosphatase 1 3.1.3.11 0.657
4keb FOLDihydrofolate reductase 1.5.1.3 0.657
1toj HCIAspartate aminotransferase 2.6.1.1 0.655
4qed NAPElxO / 0.655
4fm5 DF0Prostaglandin G/H synthase 2 1.14.99.1 0.654
4ejm NAPPutative zinc-binding dehydrogenase / 0.653
1xdq MTEProtein-methionine-sulfoxide reductase catalytic subunit MsrP / 0.651
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.651
1e9h INRCyclin-dependent kinase 2 2.7.11.22 0.650
1lwx AZDNucleoside diphosphate kinase, cytosolic 2.7.4.6 0.650
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.650