Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1fkw | PUR | Adenosine deaminase | 3.5.4.4 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1fkw | PUR | Adenosine deaminase | 3.5.4.4 | 0.898 | |
| 1uio | HPR | Adenosine deaminase | 3.5.4.4 | 0.855 | |
| 2ada | HPR | Adenosine deaminase | 3.5.4.4 | 0.850 | |
| 1fkx | PRH | Adenosine deaminase | 3.5.4.4 | 0.782 | |
| 1a4l | DCF | Adenosine deaminase | 3.5.4.4 | 0.770 | |
| 2vi5 | Y19 | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.654 |