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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fkl RAP Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fkl RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.137
1fkb RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.049
2dg3 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.013
1c9h RAPPeptidyl-prolyl cis-trans isomerase FKBP1B 5.2.1.8 1.005
2dg4 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.974
4qt3 RAPPeptidylprolyl isomerase / 0.968
1nsg RADPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.962
1nsg RADSerine/threonine-protein kinase mTOR 2.7.11.1 0.962
2fap RADPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.962
2fap RADSerine/threonine-protein kinase mTOR 2.7.11.1 0.962
2dg9 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.935
4drh RAPSerine/threonine-protein kinase mTOR 2.7.11.1 0.896
4drh RAPPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.896
4dri RAPSerine/threonine-protein kinase mTOR 2.7.11.1 0.867
4dri RAPPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.867
1bkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.850
2fke FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.850
1fkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.836
4dz2 FK5Peptidyl-prolyl cis-trans isomerase / 0.831
4drj RAPSerine/threonine-protein kinase mTOR 2.7.11.1 0.823
4drj RAPPeptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 0.823
1fkj FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.821
1fkd 818Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.818
1fap RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.817
1fap RAPSerine/threonine-protein kinase mTOR 2.7.11.1 0.817
4fap ARDPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.803
4fap ARDSerine/threonine-protein kinase mTOR 2.7.11.1 0.803
3ihz FK5Peptidylprolyl isomerase / 0.783
1qpf 858Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.762
4dh0 MR8Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.752
2vn1 FK5Peptidylprolyl isomerase / 0.745
4odo FK5Peptidyl-prolyl cis-trans isomerase / 0.741
4drp 0MDPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.736
1tco FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.725
1tco FK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 3.1.3.16 0.725
4drn 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.722
1j4h SUBPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.719
1fkh SBXPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.713
3o5r FK5Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.701
1qpl 587Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.698
4dro 0MDPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.692
1a7x FKAPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.691
4lay I63Peptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 0.685
1bl4 AP1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.683
1fki SB1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.675
1fkg SB3Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.671
4drm 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.654