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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fkj FK5 Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fkj FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.139
1fkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.096
2fke FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.063
1fkd 818Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.043
4dz2 FK5Peptidyl-prolyl cis-trans isomerase / 0.974
1tco FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.938
1tco FK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 3.1.3.16 0.938
3ihz FK5Peptidylprolyl isomerase / 0.931
1qpf 858Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.899
1qpl 587Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.884
1bkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.881
4dh0 MR8Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.877
1a7x FKAPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.858
3o5r FK5Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.858
2vn1 FK5Peptidylprolyl isomerase / 0.835
4qt3 RAPPeptidylprolyl isomerase / 0.826
2dg3 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.824
1fkl RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.821
1c9h RAPPeptidyl-prolyl cis-trans isomerase FKBP1B 5.2.1.8 0.810
4odo FK5Peptidyl-prolyl cis-trans isomerase / 0.796
1q6i FK5FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 5.2.1.8 0.772
1fkb RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.755
2dg4 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.750
4drm 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.739
1fki SB1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.721
1fkh SBXPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.713
1bl4 AP1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.705
1fkg SB3Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.699
4lay I63Peptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 0.684
4drn 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.672
1j4h SUBPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.663
2dg9 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.653