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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fkh SBX Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fkh SBXPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.028
1fkg SB3Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.805
4drk I63Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.805
2dg4 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.764
2fke FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.764
4fap ARDPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.764
4fap ARDSerine/threonine-protein kinase mTOR 2.7.11.1 0.764
4jfi 1KTPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.763
2dg9 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.757
4dro 0MDPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.752
1qpf 858Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.749
4dz2 FK5Peptidyl-prolyl cis-trans isomerase / 0.749
4drp 0MDPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.747
4lay I63Peptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 0.740
1fkb RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.731
4drm 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.731
1fki SB1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.725
4qt3 RAPPeptidylprolyl isomerase / 0.721
4dh0 MR8Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.716
1fkj FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.713
1fkl RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.713
1fkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.708
1fkd 818Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.701
1j4h SUBPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.696
4odo FK5Peptidyl-prolyl cis-trans isomerase / 0.692
3o5r FK5Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.688
1q6i FK5FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 5.2.1.8 0.679
1qpl 587Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.677
2vn1 FK5Peptidylprolyl isomerase / 0.668
1bkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.667
4drn 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.666
1bl4 AP1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.651