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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fkd 818 Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fkd 818Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.085
1fkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.078
2fke FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.060
1fkj FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.043
4dz2 FK5Peptidyl-prolyl cis-trans isomerase / 0.971
3ihz FK5Peptidylprolyl isomerase / 0.927
1tco FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.891
1tco FK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 3.1.3.16 0.891
1qpf 858Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.874
1bkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.862
1qpl 587Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.850
1a7x FKAPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.838
2vn1 FK5Peptidylprolyl isomerase / 0.836
4odo FK5Peptidyl-prolyl cis-trans isomerase / 0.836
1fkl RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.818
4dh0 MR8Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.818
1fkb RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.814
3o5r FK5Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.801
2dg3 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.776
2dg4 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.770
4lay I63Peptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 0.770
1q6i FK5FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 5.2.1.8 0.742
4qt3 RAPPeptidylprolyl isomerase / 0.742
1fki SB1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.731
2dg9 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.728
1fkh SBXPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.701
1bl4 AP1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.696
4drk I63Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.686
4drn 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.684
4fap ARDPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.674
4fap ARDSerine/threonine-protein kinase mTOR 2.7.11.1 0.674
4drm 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.664