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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fel FEN Retinol-binding protein 4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fel FENRetinol-binding protein 4 / 1.161
1kt5 RTLRetinol-binding protein 4 / 0.811
1kt4 RTLRetinol-binding protein 4 / 0.798
1kt7 RTLRetinol-binding protein 4 / 0.797
1aqb RTLRetinol-binding protein 4 / 0.748
1brp RTLRetinol-binding protein 4 / 0.737
1ydr IQPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650