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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fby REA Retinoic acid receptor RXR-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fby REARetinoic acid receptor RXR-alpha / 1.138
1xiu REARetinoic acid receptor RXR / 0.927
3fal REARetinoic acid receptor RXR-alpha / 0.882
1xls REARetinoic acid receptor RXR-alpha / 0.861
1fm6 9CRRetinoic acid receptor RXR-alpha / 0.832
3fc6 REARetinoic acid receptor RXR-alpha / 0.810
1k74 9CRRetinoic acid receptor RXR-alpha / 0.806
2acl REARetinoic acid receptor RXR-alpha / 0.805
1fm9 9CRRetinoic acid receptor RXR-alpha / 0.751
4m8h R4MRetinoic acid receptor RXR-alpha / 0.727
3oap REARetinoic acid receptor RXR-alpha / 0.722
3uvv REARetinoic acid receptor RXR-alpha / 0.720
4k4j 1O8Retinoic acid receptor RXR-alpha / 0.682
4k6i 9RARetinoic acid receptor RXR-alpha / 0.678
3l06 SN0N-acetylornithine carbamoyltransferase 2.1.3.9 0.663
4m8e 29VRetinoic acid receptor RXR-alpha / 0.662