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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fb7 ROC Gag-Pol polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fb7 ROCGag-Pol polyprotein / 1.012
1hxb ROCGag-Pol polyprotein 3.4.23.16 0.772
3ekq ROCGag-Pol polyprotein 3.4.23.16 0.737
3k4v ROCGag-Pol polyprotein 3.4.23.16 0.721
3s56 ROCProtease / 0.711
3tl9 ROCGag-Pol polyprotein 3.4.23.16 0.707
2nmy ROCProtease / 0.694
1hpx KNIGag-Pol polyprotein / 0.689
1zj7 0ZTGag-Pol polyprotein 3.4.23.16 0.688
3el4 ROCGag-Pol polyprotein 3.4.23.16 0.679
3ndu ROCGag-Pol polyprotein 3.4.23.16 0.677
3fx5 KNIGag-Pol polyprotein 3.4.23.16 0.675
3el1 DR7Gag-Pol polyprotein 3.4.23.16 0.672
3sa3 23XProtease / 0.672
3oxc ROCProtease / 0.670
1izh Q50Protease / 0.669
3d1y ROCGag-Pol polyprotein 3.4.23.16 0.669
1c6z ROCProtease / 0.668
2pk6 O33V-1 protease / 0.668
2qi5 MZ7Gag-Pol polyprotein / 0.668
1hxw RITGag-Pol polyprotein / 0.667
2q64 1UNGag-Pol polyprotein 3.4.23.16 0.667
3ndt ROCGag-Pol polyprotein 3.4.23.16 0.667
3cyx ROCGag-Pol polyprotein 3.4.23.16 0.665
2fxe DR7Gag-Pol polyprotein 3.4.23.16 0.662
3kf0 3TLGag-Pol polyprotein / 0.660
1b6l PI4Gag-Pol polyprotein 3.4.23.16 0.658
1hvs A77Gag-Pol polyprotein / 0.658
2pk5 075Protease / 0.657
3ufn ROCGag-Pol polyprotein / 0.657
3lit E15Protease / 0.656
3kdb 006Gag-Pol polyprotein 3.4.23.16 0.654
3kfr 3TLGag-Pol polyprotein / 0.652
3eky DR7Gag-Pol polyprotein 3.4.23.16 0.651
3tog 079Gag-Pol polyprotein 2.7.7.49 0.651