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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fa0 3AT Poly(A) polymerase 2.7.7.19

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fa0 3ATPoly(A) polymerase 2.7.7.19 0.861
4u03 GTPCyclic GMP-AMP synthase / 0.687
4fhp UTPTerminal uridylyltransferase cid1 / 0.667
4xj4 3ATCyclic GMP-AMP synthase / 0.667
3au2 DGTDNA polymerase beta family (X family) / 0.665
1r89 CTPCCA-adding enzyme 2.7.7.72 0.663
2q66 ATPPoly(A) polymerase 2.7.7.19 0.658
4k97 ATPCyclic GMP-AMP synthase / 0.654
2a84 ATPPantothenate synthetase 6.3.2.1 0.651