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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1f8g NAD NAD(P) transhydrogenase subunit alpha part 1 1.6.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1f8g NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.949
2fsv NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.853
1u28 NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.832
1u2g APRNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.811
2oor NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.788
1l7e NAINAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.759
2oo5 TXDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.754
1ptj SNDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.713
1x15 NADNAD(P) transhydrogenase subunit alpha 1.6.1.2 0.709
1u2d NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.702
1x14 NADNAD(P) transhydrogenase subunit alpha 1.6.1.2 0.697
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.693
1y8q ATPSUMO-activating enzyme subunit 2 6.3.2 0.680
3qvw NADMyo-inositol-1-phosphate synthase (Ino1) / 0.678
3h5n ATPMccB protein / 0.677
4k28 NADShikimate dehydrogenase family protein / 0.675
3qvt NAIMyo-inositol-1-phosphate synthase (Ino1) / 0.673
1p1i NADInositol-3-phosphate synthase 5.5.1.4 0.666
4j1t NADNAD/NADP transhydrogenase alpha subunit 1 / 0.666
3wv7 ADPHmd co-occurring protein HcgE / 0.659
2qg4 NADUDP-glucose 6-dehydrogenase 1.1.1.22 0.658
1zmd NAIDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.655
5jr3 SAHCarminomycin 4-O-methyltransferase DnrK 2.1.1.292 0.654
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.652
5ccb SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.651
1hzz NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.650
1psd NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.650