sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1evj | NAD | Glucose--fructose oxidoreductase | 1.1.99.28 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1evj | NAD | Glucose--fructose oxidoreductase | 1.1.99.28 | 1.175 | |
| 5a04 | NDP | Glucose-fructose oxidoreductase | / | 1.035 | |
| 1h6b | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 1.033 | |
| 1h6a | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 1.024 | |
| 5a05 | NDP | Glucose-fructose oxidoreductase | / | 1.016 | |
| 1h6c | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 1.011 | |
| 1ryd | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 1.008 | |
| 5a02 | NAP | Glucose-fructose oxidoreductase | / | 1.000 | |
| 1h6d | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 0.996 | |
| 5a03 | NDP | Glucose-fructose oxidoreductase | / | 0.996 | |
| 5a06 | NDP | Glucose-fructose oxidoreductase | / | 0.970 | |
| 1ofg | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 0.964 | |
| 1zh8 | NAP | Uncharacterized protein | / | 0.883 | |
| 1rye | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 0.808 | |
| 2ixb | NAD | Alpha-N-acetylgalactosaminidase | 3.2.1.49 | 0.795 | |
| 2ixa | NAD | Alpha-N-acetylgalactosaminidase | 3.2.1.49 | 0.765 | |
| 3o9z | NAD | Lipopolysaccaride biosynthesis protein wbpB | / | 0.744 | |
| 3oa2 | NAD | UDP-N-acetyl-2-amino-2-deoxy-D-glucuronate oxidase | / | 0.702 | |
| 1nvm | NAD | Acetaldehyde dehydrogenase | 1.2.1.10 | 0.700 | |
| 3nt2 | NAD | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase | 1.1.1.18 | 0.695 | |
| 1pj2 | NAI | NAD-dependent malic enzyme, mitochondrial | 1.1.1.38 | 0.690 | |
| 3h3j | NAD | L-lactate dehydrogenase 1 | 1.1.1.27 | 0.687 | |
| 2rcy | NAP | Pyrroline-5-carboxylate reductase | / | 0.682 | |
| 2x6t | NAP | ADP-L-glycero-D-manno-heptose-6-epimerase | / | 0.682 | |
| 2pk3 | A2R | GDP-6-deoxy-D-mannose reductase | / | 0.680 | |
| 4nfs | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.679 | |
| 5bsg | NAP | Pyrroline-5-carboxylate reductase | / | 0.678 | |
| 2q3e | NAI | UDP-glucose 6-dehydrogenase | 1.1.1.22 | 0.677 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.675 | |
| 4xd2 | NAI | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.674 | |
| 4xgi | NAD | Glutamate dehydrogenase | / | 0.674 | |
| 3ec7 | NAD | Inositol 2-dehydrogenase | / | 0.673 | |
| 3m2t | NAD | Probable dehydrogenase | / | 0.673 | |
| 2voj | NAD | Alanine dehydrogenase | 1.4.1.1 | 0.672 | |
| 5bsf | NAD | Pyrroline-5-carboxylate reductase | / | 0.672 | |
| 5kcp | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.672 | |
| 5kjf | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.672 | |
| 1mgo | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.671 | |
| 2glx | NDP | 1,5-anhydro-D-fructose reductase | / | 0.671 | |
| 1u3v | NAD | Alcohol dehydrogenase 1B | 1.1.1.1 | 0.668 | |
| 5cdg | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.668 | |
| 1ht0 | NAD | Alcohol dehydrogenase 1C | 1.1.1.1 | 0.667 | |
| 3q2k | NAI | Probable oxidoreductase | / | 0.667 | |
| 4gae | NDP | 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic | 1.1.1.267 | 0.667 | |
| 1xse | NDP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.666 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.666 | |
| 3cea | NAD | Myo-inositol 2-dehydrogenase-like (Promiscuous) | / | 0.666 | |
| 4gmg | NAP | Yersiniabactin biosynthetic protein YbtU | / | 0.665 | |
| 4ng5 | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.664 | |
| 1mv8 | GDX | GDP-mannose 6-dehydrogenase | 1.1.1.132 | 0.662 | |
| 3pef | NAP | Glyoxalate/3-oxopropanoate/4-oxobutanoate reductase | / | 0.661 | |
| 3uce | NDP | Dehydrogenase | / | 0.661 | |
| 1geg | NAD | Diacetyl reductase [(S)-acetoin forming] | 1.1.1.304 | 0.660 | |
| 1m75 | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.660 | |
| 2q1s | NAI | Putative nucleotide sugar epimerase/ dehydratase | / | 0.660 | |
| 2jhf | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.659 | |
| 2hdh | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.658 | |
| 2ohx | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.656 | |
| 3adp | NAI | Lambda-crystallin | 1.1.1.45 | 0.656 | |
| 4l8v | NAP | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase | 1.1.1.18 | 0.656 | |
| 2x86 | NAP | ADP-L-glycero-D-manno-heptose-6-epimerase | / | 0.655 | |
| 1do8 | NAD | NAD-dependent malic enzyme, mitochondrial | 1.1.1.38 | 0.654 | |
| 1heu | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.654 | |
| 1hld | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.654 | |
| 1muu | GDX | GDP-mannose 6-dehydrogenase | 1.1.1.132 | 0.654 | |
| 3b1j | NAD | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.653 | |
| 4xr9 | TMP | CalS8 | / | 0.652 | |
| 1axe | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.651 | |
| 4i3v | NAD | Aldehyde dehydrogenase (NAD+) | / | 0.651 | |
| 2cvz | NDP | 3-hydroxyisobutyrate dehydrogenase | / | 0.650 | |
| 2gn8 | NAP | UDP-N-acetylglucosamine 4,6-dehydratase (inverting) | 4.2.1.115 | 0.650 | |
| 3bts | NAD | Galactose/lactose metabolism regulatory protein GAL80 | / | 0.650 |