Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1err RAL Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1err RALEstrogen receptor / 1.433
1qkn RALEstrogen receptor beta / 0.927
2ayr L4GEstrogen receptor / 0.885
1yim CM4Estrogen receptor / 0.835
2jfa RALEstrogen receptor / 0.821
2ouz C3DEstrogen receptor / 0.805
1uom PTIEstrogen receptor / 0.794
4iw6 1GUEstrogen receptor / 0.739
2qgt EEDEstrogen receptor / 0.722
1xpc AITEstrogen receptor / 0.713
3erd DESEstrogen receptor / 0.712
4iv4 1GSEstrogen receptor / 0.701
1xp9 AIJEstrogen receptor / 0.695
5dxg ESTEstrogen receptor / 0.692
1xqc AEJEstrogen receptor / 0.691
1xp1 AIHEstrogen receptor / 0.681
4ivw 1GJEstrogen receptor / 0.671
3ken ZZDKinesin-like protein KIF11 / 0.667
1s9q OHTEstrogen-related receptor gamma / 0.664
5dx3 ESTEstrogen receptor / 0.663
1sj0 E4DEstrogen receptor / 0.660
1xp6 AIUEstrogen receptor / 0.654
2bj4 OHTEstrogen receptor / 0.653
3uud ESTEstrogen receptor / 0.652
2qe4 JJ3Estrogen receptor / 0.651
4iu7 1GMEstrogen receptor / 0.650