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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1eq2 ADQ ADP-L-glycero-D-manno-heptose-6-epimerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1eq2 ADQADP-L-glycero-D-manno-heptose-6-epimerase / 1.124
2x86 ADPADP-L-glycero-D-manno-heptose-6-epimerase / 0.742
3bju ATPLysine--tRNA ligase 6.1.1.6 0.664
1j1b ANPGlycogen synthase kinase-3 beta 2.7.11.26 0.652
2zbv ADNUncharacterized protein / 0.652
1j1c ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.651