Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1el4 CTZ Obelin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1el4 CTZObelin / 1.241
1qv0 CZHObelin / 1.146
1qv1 CZHObelin / 1.095
1sl9 CZHObelin / 1.090
4n1f CZHObelin / 1.042
4mrx CZHObelin / 0.999
4nqg CZHMitrocomin / 0.854
1uhh CZPAequorin-2 / 0.827
1jf2 CZHObelin / 0.825
1s36 CEIObelin / 0.805
1jf0 CZHObelin / 0.759
1uhj CZBAequorin-2 / 0.755
1ej3 CZHAequorin-2 / 0.736