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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ek6 UPG UDP-glucose 4-epimerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ek6 UPGUDP-glucose 4-epimerase / 1.238
1i3k UPGUDP-glucose 4-epimerase / 1.084
1kvu UPGUDP-glucose 4-epimerase 5.1.3.2 1.074
1xel UPGUDP-glucose 4-epimerase 5.1.3.2 1.070
1kvt UPGUDP-glucose 4-epimerase 5.1.3.2 1.045
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 1.024
1uda UFGUDP-glucose 4-epimerase 5.1.3.2 1.006
1a9z UPGUDP-glucose 4-epimerase 5.1.3.2 0.987
1kvs UPGUDP-glucose 4-epimerase 5.1.3.2 0.983
1udb UFGUDP-glucose 4-epimerase 5.1.3.2 0.977
1hzj UD1UDP-glucose 4-epimerase / 0.966
1i3m UD1UDP-glucose 4-epimerase / 0.964
1i3l GDUUDP-glucose 4-epimerase / 0.953
1i3n UD1UDP-glucose 4-epimerase / 0.952
3enk UPGUDP-glucose 4-epimerase / 0.950
1udc UFMUDP-glucose 4-epimerase 5.1.3.2 0.900
2udp UPPUDP-glucose 4-epimerase 5.1.3.2 0.891
4zrn UPGUDP-glucose 4-epimerase, putative / 0.850
4lis UPGUDP-glucose 4-epimerase (Eurofung) / 0.812
1lrk UD1UDP-glucose 4-epimerase 5.1.3.2 0.778
1z45 UPGBifunctional protein GAL10 5.1.3.2 0.744
1sb8 UD2WbpP / 0.742
2c5e GDDGDP-mannose 3,5-epimerase 5.1.3.18 0.726
1lrj UD1UDP-glucose 4-epimerase 5.1.3.2 0.719
1i24 UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.709
1qrr UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.694
1wvg CXYCDP-glucose 4,6-dehydratase 4.2.1.45 0.683
3ruc UD2UDP-N-acetylglucosamine 4-epimerase / 0.682
1lrl UPGUDP-glucose 4-epimerase 5.1.3.2 0.671
2gn9 UPGUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.659
5ify UMPGlucose-1-phosphate thymidylyltransferase / 0.651