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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ejb INJ 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ejb INJ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 1.314
1nqw 5YL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 1.042
1w19 T5P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.929
1kyx CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.912
1nqu RDL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.867
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.849
1w19 T2P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.833
1zis INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.820
2a57 CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.820
1w19 T1P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.815
1w19 T4P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.810
2c94 TSF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.806
2vi5 Y196,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.796
2o6h INI6,7-dimethyl-8-ribityllumazine synthase 1 2.5.1.78 0.784
4kq6 DLZ6,7-dimethyl-8-ribityllumazine synthase / 0.781
2a59 LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.772
1w29 TS06,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.768
1w29 TS16,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.757
2c92 TP66,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.740
1t13 INI6,7-dimethyl-8-ribityllumazine synthase 2 / 0.738
2c9b PUG6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.724
2c97 JCL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.720
1nqx RLP6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.701
2obx INI6,7-dimethyl-8-ribityllumazine synthase 2 2.5.1.78 0.695
1rvv INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.693
4hut ATPCob(I)yrinic acid a,c-diamide adenosyltransferase 2.5.1.17 0.682
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 0.679
5je2 SAHMethyl transferase / 0.676
1qmf KEFPenicillin-binding protein 2x / 0.655