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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ei1 ANP DNA gyrase subunit B

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ei1 ANPDNA gyrase subunit B / 1.201
1s16 ANPDNA topoisomerase 4 subunit B / 0.898
4wuc ANPDNA gyrase subunit B / 0.858
3zkd ANPDNA gyrase subunit B / 0.854
4wud ANPDNA gyrase subunit B / 0.853
4prx ADPDNA gyrase subunit B / 0.752
4prv ADPDNA gyrase subunit B / 0.743
3zkb ANPDNA gyrase subunit B / 0.735
1mx0 ANPType 2 DNA topoisomerase 6 subunit B / 0.715
2e0a ANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial 2.7.11.2 0.701
1id0 ANPSensor protein PhoQ 2.7.13.3 0.686
4ipe ANPTNF receptor-associated protein 1 / 0.685
4ivg ANPTNF receptor-associated protein 1 / 0.678
1i5a ACPChemotaxis protein CheA 2.7.13.3 0.673
4fjj TTPDNA-directed DNA polymerase / 0.667
3sl2 ATPSensor histidine kinase WalK / 0.663
3t1k ANPHeat shock protein HSP 90-alpha / 0.661
3t10 ACPHeat shock protein HSP 90-alpha / 0.658
1z5c ADPType 2 DNA topoisomerase 6 subunit B / 0.655
4oau ADP2-5A-dependent ribonuclease 3.1.26 0.655
1zxn ADPDNA topoisomerase 2-alpha 5.99.1.3 0.654
2vtb FADCryptochrome DASH, chloroplastic/mitochondrial / 0.653
3d2r ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial 2.7.11.2 0.653
4fjm DCPDNA-directed DNA polymerase / 0.652
3t2s AGSHeat shock protein HSP 90-alpha / 0.651
4gt8 ADPSensor protein VraS 2.7.13.3 0.651
3a0t ADPSensor histidine kinase / 0.650