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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1egd FAD Medium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.442
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.177
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 1.093
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.081
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 1.046
3p4t FAOPutative acyl-CoA dehydrogenase / 1.023
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.012
3oib FDAPutative acyl-CoA dehydrogenase / 0.991
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.987
4m9a FDAAcyl-CoA dehydrogenase / 0.984
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.972
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.954
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.946
3r7k FDAProbable acyl CoA dehydrogenase / 0.942
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.935
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.934
5af7 FADAcyl-CoA dehydrogenase / 0.932
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.928
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.923
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.911
2dvl FADAcyl-CoA dehydrogenase / 0.903
2pg0 FADAcyl-CoA dehydrogenase / 0.898
2eba FADPutative glutaryl-CoA dehydrogenase / 0.889
3owa FADAcyl-CoA dehydrogenase / 0.872
5jsc FADPutative acyl-CoA dehydrogenase / 0.872
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.838
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.833
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.821
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.821
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.820
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.819
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.816
5ahs FADAcyl-CoA dehydrogenase / 0.809
4kto FADPutative isovaleryl-CoA dehydrogenase protein / 0.773
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.770
1u8v FAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase / 0.769
1r2j FADFkbI / 0.759
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.751
2fon FADAcyl-coenzyme A oxidase / 0.722
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.708
4irn FADAnaB / 0.705
3fcj FADNitroalkane oxidase 1.7.3.1 0.691
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.690
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.690
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.682
2z1q FADAcyl-CoA dehydrogenase / 0.680
3mkh FADNitroalkane oxidase / 0.675
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.667
3gsi FADDimethylglycine oxidase 1.5.3.10 0.662
1ofv FMNFlavodoxin / 0.660
1n1p FADCholesterol oxidase 1.1.3.6 0.659
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.659
2v5u FMNFlavodoxin / 0.655
3n19 FNRXenobiotic reductase / 0.655
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.654
3koq FMNPutative nitroreductase / 0.653
2yyl FAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component 1.14.14.9 0.652
3n39 FMNProtein NrdI / 0.651
3w8w FADPutative FAD-dependent oxygenase EncM / 0.650