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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1edo NAP 3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 1.415
4hwk NAPSepiapterin reductase 1.1.1.153 1.026
3wds NADNADH-dependent quinuclidinone reductase / 0.994
4j7x NAPSepiapterin reductase 1.1.1.153 0.987
4j7u NAPSepiapterin reductase 1.1.1.153 0.980
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.974
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.967
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.955
1oaa NAPSepiapterin reductase 1.1.1.153 0.954
2jah NDPClavaldehyde dehydrogenase / 0.947
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.947
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.946
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.941
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.939
1x7h NDPPutative ketoacyl reductase 1.3.1 0.938
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.936
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.934
3o26 NDPSalutaridine reductase / 0.933
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.933
1x7g NAPPutative ketoacyl reductase 1.3.1 0.932
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.931
3sju NDPKeto reductase / 0.930
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.929
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.927
4kwh NAPReductase homolog / 0.916
4bmv NAPShort-chain dehydrogenase / 0.915
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.915
4b79 NADProbable short-chain dehydrogenase / 0.911
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.906
3sx2 NADUncharacterized protein / 0.906
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.905
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.903
2dte NAIGlucose 1-dehydrogenase related protein / 0.902
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.900
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.899
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.899
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.896
3p19 NDPPutative blue fluorescent protein / 0.896
3ak4 NADNADH-dependent quinuclidinone reductase / 0.895
3l77 NJPShort-chain alcohol dehydrogenase / 0.894
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.894
4qec NAPElxO / 0.892
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.890
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.887
3s55 NADPutative short-chain dehydrogenase/reductase / 0.885
2wsb NADGalactitol dehydrogenase / 0.882
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.882
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.880
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.878
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.877
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.876
3ai3 NDPNADPH-sorbose reductase / 0.876
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.874
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.873
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.871
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.871
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.867
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.867
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.866
4dbz NDPPutative ketoacyl reductase 1.3.1 0.864
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.863
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.863
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.862
3ai2 NDPNADPH-sorbose reductase / 0.861
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.861
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.860
4yai NAIC alpha-dehydrogenase / 0.860
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.858
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.856
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.854
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.854
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.853
1pr9 NAPL-xylulose reductase 1.1.1.10 0.850
3tn7 NJPShort-chain alcohol dehydrogenase / 0.849
1sny NAPLD36273p / 0.848
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.848
3mje NDPAmphB / 0.848
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.847
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.845
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.845
2bd0 NAPSepiapterin reductase / 0.845
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.838
1w4z NAPPutative ketoacyl reductase 1.3.1 0.838
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.838
4u7w NDPMxaA / 0.837
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.836
3d3w NAPL-xylulose reductase 1.1.1.10 0.835
4wec NADShort chain dehydrogenase / 0.835
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.832
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.832
1ae1 NAPTropinone reductase 1 / 0.829
4yag NAIC alpha-dehydrogenase / 0.828
5jla NADPutative short-chain dehydrogenase/reductase / 0.825
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.824
4qed NAPElxO / 0.824
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.823
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.821
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.817
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.816
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.815
3geg NADShort-chain dehydrogenase/reductase SDR / 0.815
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.815
2c29 NAPDihydroflavonol 4-reductase / 0.812
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.809
2wdz NADGalactitol dehydrogenase / 0.809
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.809
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.807
3tsc NADUncharacterized protein / 0.807
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.805
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.804
2p5y NADUDP-glucose 4-epimerase / 0.802
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.802
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.800
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.797
1ipe NDPTropinone reductase 2 1.1.1.236 0.796
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.794
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.793
1iy8 NADLevodione reductase / 0.790
2yut NAPPutative short-chain oxidoreductase / 0.790
1zem NADXylitol dehydrogenase / 0.788
3r3s NADPutative oxidoreductase / 0.787
4fn4 NADShort chain dehydrogenase / 0.785
1xkq NDPUncharacterized protein / 0.784
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.784
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.784
3qrw NDPPutative ketoacyl reductase 1.3.1 0.781
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.781
3tox NAPPutative oxidoreductase / 0.780
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.780
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.779
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.776
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.773
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.771
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.770
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.769
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.767
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.766
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.762
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.762
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.762
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.761
3wmx NADNAD dependent epimerase/dehydratase / 0.760
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.759
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.758
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.757
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.756
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.754
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.746
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.745
3icp NADNAD-dependent epimerase/dehydratase / 0.745
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.744
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.741
2bfo NDPPteridine reductase 1 1.5.1.33 0.740
2yy7 NADL-threonine dehydrogenase / 0.740
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.740
5d2e NAPMlnE / 0.740
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.739
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.739
3bmo NAPPteridine reductase / 0.736
4hxy NDPPlm1 / 0.736
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.735
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.735
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.733
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.733
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.731
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.731
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.731
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.730
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.730
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.728
3ko8 NADNAD-dependent epimerase/dehydratase / 0.728
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.727
3uce NDPDehydrogenase / 0.727
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.726
1sby NADAlcohol dehydrogenase 1.1.1.1 0.726
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.724
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.723
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.723
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.723
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.722
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.721
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.721
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.720
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.718
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.718
4eso NAPPutative oxidoreductase / 0.717
4clo NAPPteridine reductase / 0.716
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.716
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.715
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.715
3u4c NDPNADPH-dependent reductase BacG / 0.714
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.714
5jyd NADShort chain dehydrogenase / 0.714
1orr NADCDP-paratose 2-epimerase / 0.713
3h4v NAPPteridine reductase 1 1.5.1.33 0.713
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.712
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.711
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.708
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.708
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.707
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.707
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.706
3a9w NADNDP-sugar epimerase / 0.705
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.705
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.705
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.702
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.702
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.699
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.698
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.697
2hsd NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.696
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.695
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.694
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.691
3aw9 NADNAD-dependent epimerase/dehydratase / 0.690
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.688
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.688
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.686
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.684
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.684
1g1a NADdTDP-glucose 4,6-dehydratase / 0.683
3a14 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.683
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.683
4b7x NAPProbable oxidoreductase / 0.683
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.681
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.680
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.680
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.679
4b4o NDPEpimerase family protein SDR39U1 / 0.678
2jkv NAP6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.676
2rcy NAPPyrroline-5-carboxylate reductase / 0.675
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.675
3a4v NADNDP-sugar epimerase / 0.674
1i36 NAPConserved protein / 0.673
2b36 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.673
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.671
4oqy NDP(S)-imine reductase / 0.671
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.670
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.669
1i3l NADUDP-glucose 4-epimerase / 0.668
4imp NDPPolyketide synthase extender modules 3-4 / 0.667
3ras NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.666
4plp NADHomospermidine synthase 2.5.1.44 0.665
4n5n NAPAcetoacetyl-CoA reductase 1.1.1.36 0.664
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.663
4tvb NADHomospermidine synthase 2.5.1.44 0.663
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.662
3lqf NADGalactitol dehydrogenase / 0.661
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.660
3au8 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 0.660
1ek5 NADUDP-glucose 4-epimerase / 0.659
1wnt NAPL-xylulose reductase 1.1.1.10 0.659
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.658
4xrg NADHomospermidine synthase 2.5.1.44 0.658
4y1b NAPAntE / 0.657
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.656
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.656
3tri NAPPyrroline-5-carboxylate reductase / 0.656
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.656
2y05 NAPProstaglandin reductase 1 / 0.654
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.653