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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ea0 FMN Glutamate synthase [NADPH] large chain 1.4.1.13

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ea0 FMNGlutamate synthase [NADPH] large chain 1.4.1.13 1.101
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.806
2z6i FMN2-nitropropane dioxygenase / 0.787
1llw FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.766
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.763
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.754
4utl FNRXenobiotic reductase / 0.743
1llz FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.737
4utm FNRXenobiotic reductase / 0.726
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.721
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.716
3l5l FMNXenobiotic reductase / 0.715
4rje FNRLactate oxidase / 0.712
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.710
4uth FMNXenobiotic reductase / 0.709
4utk FNRXenobiotic reductase / 0.708
5cpm FNRNADH:flavin oxidoreductase / 0.707
1z48 FMNNADPH dehydrogenase / 0.692
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.690
3hf3 FMNChromate reductase / 0.689
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.686
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.686
2h8x FMNXenA / 0.685
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.682
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.681
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.679
2du2 FMNLactate oxidase / 0.677
1z44 FMNNADPH dehydrogenase / 0.676
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.674
3bw2 FMNPutative 2-nitropropane dioxygenase / 0.672
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.672
5efw FMNNPH1-1 / 0.669
3bw4 FMNPutative 2-nitropropane dioxygenase / 0.668
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 0.664
1vdc FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.664
3gr8 FMNNADPH dehydrogenase / 0.663
4df2 FMNNADPH dehydrogenase / 0.663
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.661
4j8p FMNFlavodoxin / 0.661
5j3w FMNSensory box protein / 0.661
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.660
4i6g FADCryptochrome-2 / 0.660
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.655
2zaf FADNitroalkane oxidase 1.7.3.1 0.654
3bw3 FMNPutative 2-nitropropane dioxygenase / 0.653
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.653
4em3 FADCoenzyme A disulfide reductase / 0.652
4em4 FADCoenzyme A disulfide reductase / 0.652
2hfo FMNActivator of photopigment and puc expression / 0.650
4m52 FADDihydrolipoyl dehydrogenase 1.8.1.4 0.650