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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1e92 HBI Pteridine reductase 1 1.5.1.33

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1e92 HBIPteridine reductase 1 1.5.1.33 0.827
2bfp H4BPteridine reductase 1 1.5.1.33 0.754
2bf7 HBIPteridine reductase 1 1.5.1.33 0.749
4y8v ADPAcyl-CoA synthetase (NDP forming) / 0.744
2bfa CB3Pteridine reductase 1 1.5.1.33 0.681
3h4v DVPPteridine reductase 1 1.5.1.33 0.673
2zfi ADPKinesin-like protein KIF1A / 0.664
4dsj DGTDNA polymerase I / 0.658
3jqc JU2Pteridine reductase, putative / 0.657
4dpg APCLysine--tRNA ligase 6.1.1.6 0.656
1n6m ADPProtein claret segregational / 0.655
3ftq GNPSeptin-2 / 0.650