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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1e82 M90 Endothiapepsin 3.4.23.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1e82 M90Endothiapepsin 3.4.23.22 1.258
1od1 0QSEndothiapepsin 3.4.23.22 1.003
2jjj 0QSEndothiapepsin 3.4.23.22 0.982
2jji 0QSEndothiapepsin 3.4.23.22 0.967
1e81 M91Endothiapepsin 3.4.23.22 0.961
1gvt 2ZSEndothiapepsin 3.4.23.22 0.946
1e80 0GQEndothiapepsin 3.4.23.22 0.790
1eag A70Candidapepsin-2 3.4.23.24 0.775
1gvv 0GMEndothiapepsin 3.4.23.22 0.765
1ppl 1Z7Penicillopepsin-1 3.4.23.20 0.763
1psa 0ZLPepsin A 3.4.23.1 0.761
1ppk IVVPenicillopepsin-1 3.4.23.20 0.757
1rne C60Renin 3.4.23.15 0.756
1zap A70Candidapepsin-2 3.4.23.24 0.741
1gvw 0EMEndothiapepsin 3.4.23.22 0.730
1ppm 0P1Penicillopepsin-1 3.4.23.20 0.724
1xe5 5FEPlasmepsin-2 3.4.23.39 0.715
3d91 REMRenin 3.4.23.15 0.715
3pww ROCEndothiapepsin 3.4.23.22 0.715
2web PP4Penicillopepsin-1 3.4.23.20 0.692
3k5g BJCBeta-secretase 1 3.4.23.46 0.687
2wf2 ZY2Beta-secretase 1 3.4.23.46 0.682
3veu 0GOBeta-secretase 1 3.4.23.46 0.677
1bxo PP7Penicillopepsin-1 3.4.23.20 0.669
3lpj Z75Beta-secretase 1 3.4.23.46 0.669
2g20 L1ARenin 3.4.23.15 0.667
3own 3OXRenin 3.4.23.15 0.665
2b8v 3BNBeta-secretase 1 3.4.23.46 0.659
4i0j 842Beta-secretase 1 3.4.23.46 0.659
3cic 316Beta-secretase 1 3.4.23.46 0.656
3t3c 017Gag-Pol polyprotein 3.4.23.16 0.655
3el9 DR7Gag-Pol polyprotein 3.4.23.16 0.653
3dv1 AR9Beta-secretase 1 3.4.23.46 0.652