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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1e7q NAP GDP-L-fucose synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1e7q NAPGDP-L-fucose synthase / 1.139
1bws NDPGDP-L-fucose synthase / 0.836
1fxs NAPGDP-L-fucose synthase / 0.809
1bsv NDPGDP-L-fucose synthase / 0.721
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.711
3r3s NADPutative oxidoreductase / 0.688
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.679
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.671
3f1k NAPUncharacterized oxidoreductase YciK 1 0.667
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.667
1kc1 NDPdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.664
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.662
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.661
4hxy NDPPlm1 / 0.661
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.660
1ipe NDPTropinone reductase 2 1.1.1.236 0.658
4clo NAPPteridine reductase / 0.656
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.652
1sny NAPLD36273p / 0.651
4o1m NADEnoyl-acyl carrier reductase / 0.650