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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1e4g ATP Cell division protein FtsA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1e4g ATPCell division protein FtsA / 1.146
4a2b AGSCell division protein FtsA / 0.878
4a62 ANPPlasmid segregation protein ParM / 0.728
4a2a ATPCell division protein FtsA / 0.723
2e2q ADPATP-dependent hexokinase / 0.704
1yxq ATPActin, alpha skeletal muscle / 0.695
4k42 ADPActin, alpha skeletal muscle / 0.681
4k41 ATPActin, alpha skeletal muscle / 0.675
3wt0 ATPCell division protein FtsA / 0.674
3a5m ATPMajor actin / 0.669
4dtp DGTDNA-directed DNA polymerase / 0.666
2zgz GNPPlasmid segregation protein ParM / 0.665
1kxp ATPActin, alpha skeletal muscle / 0.662
3daw ATPActin, alpha skeletal muscle / 0.654
1c0f ATPMajor actin / 0.653
2v51 ATPActin, alpha skeletal muscle / 0.651
1ijj ATPActin, alpha skeletal muscle / 0.650