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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1e0j ANP DNA primase/helicase 2.7.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1e0j ANPDNA primase/helicase 2.7.7 1.081
1uad GNPRas-related protein Ral-A / 0.733
3k9l GNPGTPase HRas / 0.719
1cxz GSPTransforming protein RhoA / 0.704
2fna ADPUncharacterized protein / 0.702
4pao GSPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.699
1fnn ADPORC1-type DNA replication protein / 0.695
4nh0 ATPESX secretion system protein EccC / 0.694
3jvv ACPTwitching mobility protein / 0.692
3a6p GTPGTP-binding nuclear protein Ran / 0.690
2gm1 ADPKinesin-like protein KIF11 / 0.688
1got GDPGuanine nucleotide-binding protein G(t) subunit alpha-1 / 0.687
3fvq ATPFe(3+) ions import ATP-binding protein FbpC / 0.687
1r0z ATPCystic fibrosis transmembrane conductance regulator / 0.685
3ddc GNPGTPase HRas / 0.685
4epw GDPGTPase KRas / 0.685
4v02 ATPSite-determining protein / 0.685
4idn GNPAtlastin-1 3.6.5 0.684
2bc9 GNPGuanylate-binding protein 1 / 0.683
4lv6 GDPGTPase KRas / 0.683
4ql3 GDPGTPase KRas / 0.683
4q02 GDPGTPase KRas / 0.682
2q2z ADPKinesin-like protein KIF11 / 0.680
4ol0 GTPGTP-binding nuclear protein Ran / 0.678
1yzq GNPRas-related protein Rab-6A / 0.677
2j7p GNPSignal recognition particle protein / 0.677
2j7p GNPSignal recognition particle receptor FtsY / 0.677
1w5s ADPORC1-type DNA replication protein 2 / 0.676
1w5t ANPORC1-type DNA replication protein 2 / 0.676
1rj9 GCPSignal recognition particle receptor FtsY / 0.675
1h8h ADPATP synthase subunit alpha, mitochondrial / 0.673
1h8h ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.673
1z2c GNPRho-related GTP-binding protein RhoC / 0.673
2jj2 ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.673
1xts GTPGTP-binding protein Rheb / 0.670
3ews ADPATP-dependent RNA helicase DDX19B 3.6.4.13 0.670
4o25 GTPGTP-binding protein Rheb / 0.670
1ake AP5Adenylate kinase / 0.669
1l8q ADPChromosomal replication initiator protein DnaA / 0.669
2db3 ANPATP-dependent RNA helicase vasa, isoform A 3.6.4.13 0.669
3m0e ATPTranscriptional regulator (NtrC family) / 0.669
1nsf ATPVesicle-fusing ATPase 3.6.4.6 0.667
1svl ADPLarge T antigen 3.6.4 0.667
1s1c GNPTransforming protein RhoA / 0.666
2j0v GDPRac-like GTP-binding protein ARAC7 / 0.666
4xvq GNPGTPase HRas / 0.666
2oap ANPType II secretion system protein (GspE-2) / 0.665
2y65 ADPKinesin heavy chain / 0.665
3i3s GNPGTPase HRas / 0.665
1b7t ADPMyosin heavy chain, striated muscle / 0.664
3a58 GNPGTP-binding protein RHO1 / 0.662
3bos CDPRegulatory inactivation of DnaA Hda protein / 0.661
4xvu ATPATPase GET3 / 0.660
5c46 GSPRas-related protein Rab-11A / 0.660
1in5 ADPHolliday junction ATP-dependent DNA helicase RuvB / 0.659
3kuc GDPRas-related protein Rap-1A / 0.659
4cei ANPATP-dependent helicase/deoxyribonuclease subunit B 3.1 0.659
3bbp GTPRas-related protein Rab-6A / 0.658
1vg8 GNPRas-related protein Rab-7a / 0.657
3hqd ANPKinesin-like protein KIF11 / 0.657
3kkq GDPRas-related protein M-Ras / 0.657
4dlt GNPGTPase HRas / 0.656
4g01 GDPRas-related protein RABF2b / 0.656
4q03 GDPGTPase KRas / 0.656
3tnf GNPRas-related protein Rab-8A / 0.655
4be7 ATPType I restriction enzyme EcoR124II R protein 3.1.21.3 0.655
4zca ADPKinesin-like protein KIF11 / 0.655
5fl3 ADPPili retraction protein PilT / 0.655
2gvd GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.654
2v7q ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.654
2jiz ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.653
3th5 GNPRas-related C3 botulinum toxin substrate 1 / 0.653
2pg2 ADPKinesin-like protein KIF11 / 0.650