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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dz4 CAM Camphor 5-monooxygenase 1.14.15.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1dz4 CAMCamphor 5-monooxygenase 1.14.15.1 0.813
3wrj CAMCamphor 5-monooxygenase 1.14.15.1 0.806
2zax CAMCamphor 5-monooxygenase 1.14.15.1 0.805
2zui CAMCamphor 5-monooxygenase 1.14.15.1 0.805
1t87 CAMCamphor 5-monooxygenase 1.14.15.1 0.802
2m56 CAMCamphor 5-monooxygenase 1.14.15.1 0.789
1yrd CAMCamphor 5-monooxygenase 1.14.15.1 0.785
1t88 CAMCamphor 5-monooxygenase 1.14.15.1 0.784
2a1o CAMCamphor 5-monooxygenase 1.14.15.1 0.782
1iwj CAMCamphor 5-monooxygenase 1.14.15.1 0.778
1t85 CAMCamphor 5-monooxygenase 1.14.15.1 0.778
3fwg CAMCamphor 5-monooxygenase 1.14.15.1 0.778
1iwi CAMCamphor 5-monooxygenase 1.14.15.1 0.776
3wrl CAMCamphor 5-monooxygenase 1.14.15.1 0.775
6cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.774
4g3r CAMCamphor 5-monooxygenase 1.14.15.1 0.772
5cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.772
4l4a CAMCamphor 5-monooxygenase 1.14.15.1 0.769
3wrh CAMCamphor 5-monooxygenase 1.14.15.1 0.768
3wrm CAMCamphor 5-monooxygenase 1.14.15.1 0.767
4kky CAMCamphor 5-monooxygenase 1.14.15.1 0.761
3fwi CAMCamphor 5-monooxygenase 1.14.15.1 0.751
1noo CAHCamphor 5-monooxygenase 1.14.15.1 0.747
1dz8 CAMCamphor 5-monooxygenase 1.14.15.1 0.745
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
3fwj CAMCamphor 5-monooxygenase 1.14.15.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4l4b CAMCamphor 5-monooxygenase 1.14.15.1 0.740
3l63 CAMCamphor 5-monooxygenase 1.14.15.1 0.738
4ek1 CAMCamphor 5-monooxygenase 1.14.15.1 0.736
3fwf CAMCamphor 5-monooxygenase 1.14.15.1 0.720
4l4d CAMCamphor 5-monooxygenase 1.14.15.1 0.712
1o76 CAMCamphor 5-monooxygenase 1.14.15.1 0.707
1yrc CAMCamphor 5-monooxygenase 1.14.15.1 0.707
2qbo CAMCamphor 5-monooxygenase 1.14.15.1 0.700
3lxi CAMCytochrome P450 / 0.698
3cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.697
4l4e CAMCamphor 5-monooxygenase 1.14.15.1 0.689
4l4f CAMCamphor 5-monooxygenase 1.14.15.1 0.689
2z97 CAMCamphor 5-monooxygenase 1.14.15.1 0.686
2qbm CAMCamphor 5-monooxygenase 1.14.15.1 0.683
4c9p CAMCytochrome P450 / 0.679
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660