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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dmb BCD Maltose-binding periplasmic protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1dmb BCDMaltose-binding periplasmic protein / 1.117
2zyn BCDPeriplasmic binding protein / 0.788
4e5l DBHPolymerase acidic protein / 0.767
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3ck7 ACXStarch-binding protein SusD / 0.692
2d09 FLVBiflaviolin synthase CYP158A2 / 0.671
2fut H1SHeparin and heparin-sulfate lyase / 0.669
4e5f 0N7Polymerase acidic protein / 0.660