Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dj3 GDP Adenylosuccinate synthetase, chloroplastic

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1dj3 GDPAdenylosuccinate synthetase, chloroplastic / 1.001
1mez GDPAdenylosuccinate synthetase isozyme 1 / 0.820
1mf0 GDPAdenylosuccinate synthetase isozyme 1 / 0.807
1dj2 GDPAdenylosuccinate synthetase, chloroplastic / 0.763
5l3s GNPSignal recognition particle receptor FtsY / 0.714
1rj9 GCPSignal recognition particle receptor FtsY / 0.709
1loo GTPAdenylosuccinate synthetase isozyme 1 / 0.701
2j7p GNPSignal recognition particle protein / 0.695
2j7p GNPSignal recognition particle receptor FtsY / 0.695
1hop GCPAdenylosuccinate synthetase / 0.684
5l3r GCPCell division protein FtsY homolog, chloroplastic / 0.683
1azt GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.682
1okk GCPSignal recognition particle protein / 0.676
1okk GCPSignal recognition particle receptor FtsY / 0.676
4g01 GDPRas-related protein RABF2b / 0.670
3onw GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.669
1gp2 GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.666
2bme GNPRas-related protein Rab-4A / 0.664
4g5q GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.664
1xnj ADPBifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 2.7.1.25 0.661
2c9c ATPPsp operon transcriptional activator / 0.659
4cf7 ADPAdenylate kinase / 0.659
5di3 GNPADP-ribosylation factor-like protein 3 / 0.659
4dxa GSPRas-related protein Rap-1b / 0.657
1z0d GDPRas-related protein Rab-5C / 0.655
3k8y GNPGTPase HRas / 0.654
1cul GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.653
4pan GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.653
3rs5 GNPGTPase HRas / 0.652
3zia ATPATP synthase subunit alpha, mitochondrial / 0.652
1w0k ADPATP synthase subunit alpha, mitochondrial / 0.651
1w0k ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.651
2cl6 CAGGTPase HRas / 0.651
2gm1 ADPKinesin-like protein KIF11 / 0.651
3mjh GTPRas-related protein Rab-5A / 0.651
2gks ADPProbable bifunctional SAT/APS kinase 2.7.1.25 0.650
4asu ADPATP synthase subunit alpha, mitochondrial / 0.650
4rkf GNPRas-related protein Rab-3 / 0.650