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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dj2 GDP Adenylosuccinate synthetase, chloroplastic

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1dj2 GDPAdenylosuccinate synthetase, chloroplastic / 0.987
1dj3 GDPAdenylosuccinate synthetase, chloroplastic / 0.763
1mf0 GDPAdenylosuccinate synthetase isozyme 1 / 0.749
1mez GDPAdenylosuccinate synthetase isozyme 1 / 0.732
1loo GTPAdenylosuccinate synthetase isozyme 1 / 0.728
1okk GCPSignal recognition particle protein / 0.694
1okk GCPSignal recognition particle receptor FtsY / 0.694
4g5q GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.680
1rj9 GCPSignal recognition particle receptor FtsY / 0.678
3c16 GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.678
1u0h GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.677
5l3r GCPCell division protein FtsY homolog, chloroplastic / 0.671
2j7p GNPSignal recognition particle protein / 0.668
2j7p GNPSignal recognition particle receptor FtsY / 0.668
3cx6 GDPGuanine nucleotide-binding protein subunit alpha-13 / 0.666
1wbb ADPDNA mismatch repair protein MutS / 0.661
4xvq GNPGTPase HRas / 0.658
3myk ANPMyosin-2 heavy chain / 0.652
4hi0 GDPUrease accessory protein UreG / 0.651