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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dir NAD Dihydropteridine reductase 1.5.1.34

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1dir NADDihydropteridine reductase 1.5.1.34 1.077
1dhr NADDihydropteridine reductase 1.5.1.34 0.796
1hdr NADDihydropteridine reductase 1.5.1.34 0.773
3orf NADDihydropteridine reductase 1.5.1.34 0.754
2yut NAPPutative short-chain oxidoreductase / 0.689
2wdz NADGalactitol dehydrogenase / 0.674
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.671
3h4v NAPPteridine reductase 1 1.5.1.33 0.670
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.670
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.668
3aw9 NADNAD-dependent epimerase/dehydratase / 0.666
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.665
1zem NADXylitol dehydrogenase / 0.665
4m55 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.663
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.661
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.661
2p5y NADUDP-glucose 4-epimerase / 0.660
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.660
1j49 NADD-lactate dehydrogenase 1.1.1.28 0.657
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.657
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.657
1p1i NADInositol-3-phosphate synthase 5.5.1.4 0.656
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.656
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.656
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.656
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.655
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.655
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.654
4i3v NADAldehyde dehydrogenase (NAD+) / 0.654
1rpn NDPGDP-mannose 4,6-dehydratase / 0.653
3q2k NAIProbable oxidoreductase / 0.653
3l77 NJPShort-chain alcohol dehydrogenase / 0.651
3mje NDPAmphB / 0.651
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.651