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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dgh NDP Catalase 1.11.1.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1dgh NDPCatalase 1.11.1.6 1.189
1dgf NDPCatalase 1.11.1.6 1.074
1dgb NDPCatalase 1.11.1.6 1.058
1dgg NDPCatalase 1.11.1.6 0.927
3nwl NDPCatalase 1.11.1.6 0.924
7cat NDPCatalase 1.11.1.6 0.808
8cat NDPCatalase 1.11.1.6 0.808
2cah NDPCatalase 1.11.1.6 0.764
4e37 NDPCatalase 1.11.1.6 0.726
4blc NDPCatalase 1.11.1.6 0.691
4dbc 3QPAspartate aminotransferase 2.6.1.1 0.661
3wyc NAPMeso-diaminopimelate D-dehydrogenase 1.4.1.16 0.652