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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dgg NDP Catalase 1.11.1.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1dgg NDPCatalase 1.11.1.6 1.150
1dgh NDPCatalase 1.11.1.6 0.927
1dgf NDPCatalase 1.11.1.6 0.916
1dgb NDPCatalase 1.11.1.6 0.914
3nwl NDPCatalase 1.11.1.6 0.852
8cat NDPCatalase 1.11.1.6 0.847
7cat NDPCatalase 1.11.1.6 0.809
4e37 NDPCatalase 1.11.1.6 0.764
2cah NDPCatalase 1.11.1.6 0.745