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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dgf NDP Catalase 1.11.1.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1dgf NDPCatalase 1.11.1.6 1.230
1dgh NDPCatalase 1.11.1.6 1.074
1dgb NDPCatalase 1.11.1.6 1.008
3nwl NDPCatalase 1.11.1.6 0.957
1dgg NDPCatalase 1.11.1.6 0.916
4e37 NDPCatalase 1.11.1.6 0.834
8cat NDPCatalase 1.11.1.6 0.810
7cat NDPCatalase 1.11.1.6 0.776
2cah NDPCatalase 1.11.1.6 0.735
4blc NDPCatalase 1.11.1.6 0.677
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.664
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.650