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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dg7 WRB Dihydrofolate reductase 1.5.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1dg7 WRBDihydrofolate reductase 1.5.1.3 1.043
3um5 CP6Bifunctional dihydrofolate reductase-thymidylate synthase / 0.701
1j3k WRABifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.676
3tq8 TOPDihydrofolate reductase / 0.668
4m2x TMQDihydrofolate reductase 1.5.1.3 0.664
4dp3 MMVBifunctional dihydrofolate reductase-thymidylate synthase / 0.663