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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1df8 BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1df8 BTNStreptavidin / 0.982
1luq BTNStreptavidin / 0.976
1mk5 BTNStreptavidin / 0.972
3wyq BTNStreptavidin / 0.972
3ry2 BTNStreptavidin / 0.971
2izi BTNStreptavidin / 0.969
2y3f BTNStreptavidin / 0.968
2izf BTNStreptavidin / 0.963
1n9m BTNStreptavidin / 0.962
1nqm BTNStreptavidin / 0.961
2rtg BTNStreptavidin / 0.952
2izh BTNStreptavidin / 0.949
4yvb BTNStreptavidin / 0.939
1ndj BTNStreptavidin / 0.938
3wyp BSOStreptavidin / 0.937
3wzn BTNStreptavidin / 0.935
4gda BTNStreptavidin / 0.932
1swe BTNStreptavidin / 0.931
2izj BTNStreptavidin / 0.929
1n43 BTNStreptavidin / 0.923
2rtd BTNStreptavidin / 0.920
2rtf BTNStreptavidin / 0.919
1i9h BNIStreptavidin / 0.908
4dne DTBStreptavidin / 0.905
1swg BTNStreptavidin / 0.900
2rte BTNStreptavidin / 0.897
4gd9 BTNStreptavidin / 0.897
3rdo BTNStreptavidin / 0.896
1mep BTNStreptavidin / 0.890
2zsc BTNTamavidin2 / 0.890
4bx7 B4FStreptavidin / 0.886
1rxj BNIStreptavidin / 0.881
4z28 BTNHoefavidin / 0.881
3rdq DTBStreptavidin / 0.868
1stp BTNStreptavidin / 0.866
2rtm IMIStreptavidin / 0.864
1lcw SHMStreptavidin / 0.860
1swt BTNStreptavidin / 0.859
2rtq IMIStreptavidin / 0.858
1lcz BH7Streptavidin / 0.856
1nc9 IMIStreptavidin / 0.842
2rtp IMIStreptavidin / 0.839
1swp BTNStreptavidin / 0.836
1swr BTNStreptavidin / 0.832
2uyw BTNAvd protein / 0.827
2izl IMIStreptavidin / 0.821
1rxh BNIStreptavidin / 0.812
3t2w BTNAvidin/streptavidin / 0.806
2rtn IMIStreptavidin / 0.793
2rto IMIStreptavidin / 0.781
1y52 BTNAvidin-related protein 4/5 / 0.778
2fhl BNIAvidin-related protein 4/5 / 0.777
2fhn BNIAvidin-related protein 4/5 / 0.775
4bcs BTNAvidin-related protein 4/5 / 0.774
3ew2 BTNHypothetical conserved protein / 0.769
1swn BTNStreptavidin / 0.751
3vhi VHIAvidin / 0.750
1swd BTNStreptavidin / 0.742
4bj8 BTNAvidin / 0.738
3vgw NVZAvidin / 0.718
2rtl IMIStreptavidin / 0.707
3vhh VHHAvidin / 0.684
2c4i BTNAvidin / 0.671
4ggz BTNBll1558 protein / 0.669
2izg BTNStreptavidin / 0.664
2avi BTNAvidin / 0.656
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 0.655
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 0.654
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 0.652
1ldq SHMAvidin / 0.650